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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58442732_58453268_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58442732 - 58453268
Intron Length:
10537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTACCAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTACC
Flanking Amino Acid:
TSEIITFAESGTPKKTLHFE
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
100
1.24
0.5
100
0
Major PPT
66.5
0.37
1
65.1
40.1
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
69.2
0.59
1.9
84.46
34.1

Associated Gene:

Gene:
INHBA
Ensembl Gene ID:
ENSAPLG00000018903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032658
58439131 - 58454301
15171