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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58568957_58727295_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58568957 - 58727295
Intron Length:
158339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGATAA
5'SS Class:
major
3'SS Sequence:
TTGTGTGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAACT
Flanking Amino Acid:
LHTGAVAQHELPGVRVMD*
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.3
73.9
32.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.6
0.64
1
72.2
42.7
Minor 5ss
32.7
-2
2.9
38.8
46.3
Minor BPS
68.3
0.65
1.5
85.33
34.5

Associated Gene:

Gene:
SUGCT
Ensembl Gene ID:
ENSAPLG00000004741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026243
58568930 - 59048888
479959