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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58915510_58926833_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58915510 - 58926833
Intron Length:
11324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTATATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGCTTCTTATAT
Flanking Amino Acid:
RKELIDILSTRFSEKTTSKW
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75.6
0.58
0.8
73.8
35.6
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
57.7
0.32
1.7
73.45
43.3

Associated Gene:

Gene:
SUGCT
Ensembl Gene ID:
ENSAPLG00000004741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027393
58628110 - 59048888
420779
ENSAPLT00000026243
58568930 - 59048888
479959
ENSAPLT00000004880
58635722 - 59048888
413167