About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58934166_58987913_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58934166 - 58987913
Intron Length:
53748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
CACACCTTATCA
Flanking Amino Acid:
TAHGSIVPYQAFKTKDGYIV
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
78.3
0.7
1
80
32.1
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
55.4
0.16
1.7
61.11
44.7

Associated Gene:

Gene:
SUGCT
Ensembl Gene ID:
ENSAPLG00000004741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027393
58628110 - 59048888
420779
ENSAPLT00000026243
58568930 - 59048888
479959
ENSAPLT00000004880
58635722 - 59048888
413167