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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59010120_59034140_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59010120 - 59034140
Intron Length:
24021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTAA
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTGATTGAATT
Flanking Amino Acid:
APHIVYCSITGYGQTGPMVQ
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.4
35
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
42.2
-0.9
3.1
55.3
48.9
Minor BPS
49.7
0.06
1.7
69.16
42.4

Associated Gene:

Gene:
SUGCT
Ensembl Gene ID:
ENSAPLG00000004741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027393
58628110 - 59048888
420779
ENSAPLT00000026243
58568930 - 59048888
479959
ENSAPLT00000004880
58635722 - 59048888
413167