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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59045265_59048569_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59045265 - 59048569
Intron Length:
3305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTTTC
5'SS Class:
major
3'SS Sequence:
TACAATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
ATCTTCTTACAA
Flanking Amino Acid:
PAGPQPRAATKVLAGPFATM
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
76
34.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
70.1
0.45
1
61.9
42.7
Minor 5ss
41.9
-0.9
2.8
53.8
37.2
Minor BPS
56.1
0.19
1.7
66.25
40.3

Associated Gene:

Gene:
SUGCT
Ensembl Gene ID:
ENSAPLG00000004741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027393
58628110 - 59048888
420779
ENSAPLT00000026243
58568930 - 59048888
479959
ENSAPLT00000004880
58635722 - 59048888
413167