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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59048642_59048781_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59048642 - 59048781
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
CCCTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCCCTTCCCC
Flanking Amino Acid:
GASSAAPPRGRCQEPGFPQQ
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
79
0.72
1
69
38.9
Major PPT
74.5
0.55
0.7
68.7
25
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
45.5
-0.3
3.6
75.89
40.7

Associated Gene:

Gene:
SUGCT
Ensembl Gene ID:
ENSAPLG00000004741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027393
58628110 - 59048888
420779
ENSAPLT00000026243
58568930 - 59048888
479959
ENSAPLT00000004880
58635722 - 59048888
413167