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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59051492_59055652_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59051492 - 59055652
Intron Length:
4161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GTTTCTTTACTT
Flanking Amino Acid:
SPGGFQRRYQGSPRTSTPFG
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
64.8
41.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.7
0.6
1
78.7
27.4
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
70
0.71
1.6
84.22
37.1

Associated Gene:

Gene:
MPLKIP
Ensembl Gene ID:
ENSAPLG00000030999
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028903
59050272 - 59055970
5699