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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59084003_59086078_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59084003 - 59086078
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
CTATTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GATCTCTTACTA
Flanking Amino Acid:
DVEPSKMPPPDLPLWQDCHE
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.6
40.1
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
85.7
0.8
0.8
80.6
31.1
Minor 5ss
37.2
-1.5
3
46.8
42.6
Minor BPS
54.3
0.13
1.6
62.36
37.8

Associated Gene:

Gene:
CDK13
Ensembl Gene ID:
ENSAPLG00000004750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004937
59078363 - 59126186
47824