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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59086211_59087131_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59086211 - 59087131
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGGATG
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTTTCTCCATTT
Flanking Amino Acid:
YRRKLREEFAFIPPAALDLF
Intron Amino Acid Position:
878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
68.2
42.4
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
88.3
0.86
0.7
84.9
29.9
Minor 5ss
38.4
-1.3
3.3
54.7
43.7
Minor BPS
48.8
-0
2.1
76.74
40.3

Associated Gene:

Gene:
CDK13
Ensembl Gene ID:
ENSAPLG00000004750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004937
59078363 - 59126186
47824