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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59087249_59089263_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59087249 - 59089263
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GATCTCATACCC
Flanking Amino Acid:
NQELAQLELISRICGSPCPA
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.1
41.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84
0.77
0.9
80.6
37
Minor 5ss
34.5
-1.8
2.8
42.5
44.3
Minor BPS
47.1
-0.2
1.9
58.71
39.5

Associated Gene:

Gene:
CDK13
Ensembl Gene ID:
ENSAPLG00000004750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004937
59078363 - 59126186
47824