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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59089342_59089460_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59089342 - 59089460
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
AATTGTGTAAAA
Flanking Amino Acid:
YTPAIDVWSCGCILGELFTK
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.9
35.3
Major BPS
67
0.42
1.1
57.7
39
Major PPT
76
0.59
0.9
68.6
41.3
Minor 5ss
35.9
-1.6
3.6
48.1
47.5
Minor BPS
44.8
-0.4
2.3
59.86
40

Associated Gene:

Gene:
CDK13
Ensembl Gene ID:
ENSAPLG00000004750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004937
59078363 - 59126186
47824