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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59089563_59092278_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59089563 - 59092278
Intron Length:
2716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
CTCCCCCCAACA
Flanking Amino Acid:
GLARLYNSEESRPYTNKVIT
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
68
0.45
1
57.8
39
Major PPT
67.8
0.4
0.8
62
27.3
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
48.7
-0.1
1.9
61.96
43.8

Associated Gene:

Gene:
CDK13
Ensembl Gene ID:
ENSAPLG00000004750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004937
59078363 - 59126186
47824