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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59092336_59095111_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59092336 - 59095111
Intron Length:
2776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TAACCACTAAAC
Flanking Amino Acid:
IKCSNILLNNRGQIKLADFG
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
80.5
33.7
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
77.8
0.63
0.9
71.4
39.5
Minor 5ss
41.9
-0.9
3.1
56.7
47.6
Minor BPS
45.9
-0.3
2
58.31
38.9

Associated Gene:

Gene:
CDK13
Ensembl Gene ID:
ENSAPLG00000004750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004937
59078363 - 59126186
47824