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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59095302_59105329_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59095302 - 59105329
Intron Length:
10028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TACCCCTTACCT
Flanking Amino Acid:
EDALDFKKDKGAFYLVFEYM
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
65.7
0.57
1.7
78.69
43.2

Associated Gene:

Gene:
CDK13
Ensembl Gene ID:
ENSAPLG00000004750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004937
59078363 - 59126186
47824