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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59105501_59110123_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59105501 - 59110123
Intron Length:
4623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CATTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
QVYKARDKDTGEMVALKKVR
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.7
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.3
0.68
0.8
78
30.4
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
CDK13
Ensembl Gene ID:
ENSAPLG00000004750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004937
59078363 - 59126186
47824