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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59110264_59110535_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59110264 - 59110535
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
TACTGTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TATTCTTAGAGA
Flanking Amino Acid:
AVQLHSKRRPKICGPRHGET
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
77.2
0.61
0.9
69.4
41.4
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
50.6
0.01
2
66.57
40.3

Associated Gene:

Gene:
CDK13
Ensembl Gene ID:
ENSAPLG00000004750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004937
59078363 - 59126186
47824