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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5913638_5914787_R

Intron Information:

Intron Rank:
133297
Intron Class:
major
Intron Phase:
Intron Coordinates:
5913638 - 5914787
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CCACTAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATCCCTGTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.5
28.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.6
0.44
0.9
61.7
37.6
Minor 5ss
33.5
-1.9
3.3
43.7
38.1
Minor BPS
52.8
0.07
2
65.76
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018953
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018244
5913148 - 5915915
2768