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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59146354_59148981_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59146354 - 59148981
Intron Length:
2628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGGCATTTACA
Flanking Amino Acid:
SAKTRANVDKVFFDLMREIR
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80
32.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.2
-1.6
3
50.8
45.2
Minor BPS
51.7
0.05
2.1
68.43
43.6

Associated Gene:

Gene:
RALA
Ensembl Gene ID:
ENSAPLG00000004950
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005107
59146231 - 59169253
23023
ENSAPLT00000036494
59146231 - 59164272
18042
ENSAPLT00000023158
59146231 - 59171865
25635