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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59149157_59152648_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59149157 - 59152648
Intron Length:
3492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
LESFAATADFREQILRVKED
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.6
0.89
0.7
82.1
34.6
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
RALA
Ensembl Gene ID:
ENSAPLG00000004950
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036494
59146231 - 59164272
18042
ENSAPLT00000023158
59146231 - 59171865
25635
ENSAPLT00000005107
59146231 - 59169253
23023