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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59152858_59153833_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59152858 - 59153833
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATTGTGTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATG
Flanking Amino Acid:
ALTLQFMYDEFVEDYEPTKA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.1
0.56
0.9
66.3
44.6
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
78
0.74
1.1
78.3
32.8

Associated Gene:

Gene:
RALA
Ensembl Gene ID:
ENSAPLG00000004950
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023158
59146231 - 59171865
25635
ENSAPLT00000005107
59146231 - 59169253
23023
ENSAPLT00000036494
59146231 - 59164272
18042