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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59182395_59183098_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59182395 - 59183098
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TGATATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATGATT
Flanking Amino Acid:
MSAMTVTSINA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
56.9
42.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.4
0.68
0.9
77.3
41.3
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
56.1
0.27
1.5
75.68
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005034
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005190
59182391 - 59197750
15360
ENSAPLT00000035200
59182391 - 59197750
15360
ENSAPLT00000034111
59182391 - 59197750
15360