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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59183203_59184352_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59183203 - 59184352
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
ATAAATGTGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATAAAT
Flanking Amino Acid:
ETLKLVHFCMDKPLRCPVSN
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
100
1.24
0.5
100
0
Major PPT
51.9
0.04
1.1
43.8
46.6
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
64.2
0.52
1.7
83.06
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005034
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034111
59182391 - 59197750
15360
ENSAPLT00000005190
59182391 - 59197750
15360
ENSAPLT00000035200
59182391 - 59197750
15360