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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59184852_59185290_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59184852 - 59185290
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
NRLESLSRQKGLNSHVSPSG
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.1
0.5
0.8
70.1
30.1
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005034
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035200
59182391 - 59197750
15360
ENSAPLT00000034111
59182391 - 59197750
15360
ENSAPLT00000005190
59182391 - 59197750
15360