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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59191067_59191587_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59191067 - 59191587
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGCTA
5'SS Class:
major
3'SS Sequence:
CTTTCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AATAATGCAATT
Flanking Amino Acid:
YQILEAELNPGSQVCGAKID
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.7
40.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.6
0.8
0.7
77.5
31.3
Minor 5ss
33.8
-1.8
3.5
43.8
45.8
Minor BPS
40.6
-0.6
2.1
57.58
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005034
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035200
59182391 - 59197750
15360
ENSAPLT00000034111
59182391 - 59197750
15360
ENSAPLT00000005190
59182391 - 59197750
15360