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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59195403_59196289_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59195403 - 59196289
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATTTTGAAAT
Flanking Amino Acid:
SCVSEKHTNEVIIDVVTSRE
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.6
0.6
0.9
77.1
37.1
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
61.9
0.45
1.5
78.71
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005034
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034111
59182391 - 59197750
15360