Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59195854_59196289_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59195854 - 59196289

Intron Length:

436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTATGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTGCTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTATTTTGAAAT

Flanking Amino Acid:

LHPMKENLACVIIDVVTSRE

Intron Amino Acid Position:

444

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

70.6

39.7

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

76.6

0.6

0.9

77.1

37.1

Minor 5ss

42.5

-0.8

3.1

54.1

44.6

Minor BPS

61.9

0.45

1.5

78.71

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005034

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005190

59182391 - 59197750

15360

ENSAPLT00000035200

59182391 - 59197750

15360