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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59196399_59197398_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59196399 - 59197398
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
AATGCTTTATTT
Flanking Amino Acid:
SDGFISRAVKRCMSVPVVMR
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.1
37.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
86.4
0.82
0.6
85.3
22
Minor 5ss
37.9
-1.4
2.8
52.3
44.3
Minor BPS
56.1
0.27
1.7
71.01
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005034
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035200
59182391 - 59197750
15360
ENSAPLT00000034111
59182391 - 59197750
15360
ENSAPLT00000005190
59182391 - 59197750
15360