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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59277667_59281050_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59277667 - 59281050
Intron Length:
3384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAGT
5'SS Class:
major
3'SS Sequence:
AATTTTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAATT
Flanking Amino Acid:
GPAYSQSAICRHTILRSHFF
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.4
0.62
0.8
74.7
35.3
Minor 5ss
40.7
-1
3
58.6
45.5
Minor BPS
70.4
0.72
1.5
83.48
38.1

Associated Gene:

Gene:
POU6F2
Ensembl Gene ID:
ENSAPLG00000005140
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041108
59277162 - 59531173
254012
ENSAPLT00000005304
59276887 - 59535081
258195