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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_593373_596361_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
593373 - 596361
Intron Length:
2989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CAGTCTTTGACC
Flanking Amino Acid:
VDLGTSIWQAATGLLGGVVQ
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
87.1
0.83
0.7
81.6
29.6
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
66.2
0.49
1.3
65.93
40.4

Associated Gene:

Gene:
SNAP47
Ensembl Gene ID:
ENSAPLG00000005035
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021667
583315 - 603941
20627
ENSAPLT00000048243
583833 - 605080
21248
ENSAPLT00000005194
583315 - 606413
23099
ENSAPLT00000042628
583833 - 605080
21248
ENSAPLT00000037658
589924 - 605080
15157
ENSAPLT00000034054
583315 - 605080
21766