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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59458276_59482148_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59458276 - 59482148
Intron Length:
23873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
CTTTGAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCCTCTTTGAAT
Flanking Amino Acid:
PFSASHPSSAQARGNTVLSD
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
67.6
40.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.7
0.51
0.9
63.5
41.9
Minor 5ss
47
-0.3
2.4
56.4
41.9
Minor BPS
64.9
0.55
1.4
75.61
41.6

Associated Gene:

Gene:
POU6F2
Ensembl Gene ID:
ENSAPLG00000005140
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005304
59276887 - 59535081
258195