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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59458276_59530210_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59458276 - 59530210
Intron Length:
71935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCCTCTTTGAAT
Flanking Amino Acid:
DSEDTPSKLFEARGNTVLSD
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.7
0.51
0.9
63.5
41.9
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
64.9
0.55
1.4
75.61
41.6

Associated Gene:

Gene:
POU6F2
Ensembl Gene ID:
ENSAPLG00000005140
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041108
59277162 - 59531173
254012