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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59482270_59530210_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
59482270 - 59530210
Intron Length:
47941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TACTCTTTGATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
85.8
0.8
0.8
79.7
32.4
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
68.7
0.58
1.1
70.47
36.1

Associated Gene:

Gene:
POU6F2
Ensembl Gene ID:
ENSAPLG00000005140
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005304
59276887 - 59535081
258195