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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5949383_5951569_R

Intron Information:

Intron Rank:
145594
Intron Class:
major
Intron Phase:
Intron Coordinates:
5949383 - 5951569
Intron Length:
2187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CATTGCTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
54.2
0.13
2.1
68.06
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025713
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019324
5949101 - 5954371
5271