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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5951684_5953998_R

Intron Information:

Intron Rank:
145595
Intron Class:
major
Intron Phase:
Intron Coordinates:
5951684 - 5953998
Intron Length:
2315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
CTTTCTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AATCTATGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.2
0.75
0.8
81.6
29.2
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
47.8
-0.1
1.6
57.7
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025713
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019324
5949101 - 5954371
5271