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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59597531_59597670_R

Intron Information:

Intron Rank:
132331
Intron Class:
major
Intron Phase:
Intron Coordinates:
59597531 - 59597670
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
AGGCCTTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
66.7
0.41
1
57.8
39
Major PPT
82.1
0.72
0.8
76.2
32.4
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
49.9
-0
1.5
56.28
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018447
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021413
59597424 - 59599130
1707