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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59619901_59624003_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59619901 - 59624003
Intron Length:
4103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGAGG
5'SS Class:
major
3'SS Sequence:
GCATTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCCCTATTT
Flanking Amino Acid:
GRAMAEAAEKESGYNEESTD
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.36
1.3
55.2
49
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
74.7
0.56
1
65
45.4
Minor 5ss
35.8
-1.6
3.4
48.3
47.5
Minor BPS
65.9
0.58
1.9
88.76
36.3

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000044720
59619859 - 59726451
106593
ENSAPLT00000030424
59619859 - 59726451
106593
ENSAPLT00000029096
59619859 - 59726451
106593