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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59624043_59627115_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
59624043 - 59627115
Intron Length:
3073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTTTTCTTAGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
80.9
0.7
1
81.2
36.5
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
73.3
0.81
1.5
87.32
38.6

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046230
59624004 - 59726451
102448