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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59624043_59637609_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59624043 - 59637609
Intron Length:
13567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTTGTTCACA
Flanking Amino Acid:
YNEESTDESECFAPTLPTEV
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
88
0.85
0.7
83.5
31.6
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
55.5
0.17
2.4
78.35
38.8

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000023716
59619859 - 59726451
106593