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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59637655_59638213_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59637655 - 59638213
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCTGAAG
5'SS Class:
weak_major
3'SS Sequence:
TTTAAAAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGCTTTTAAAA
Flanking Amino Acid:
LPTEVQHLVKEDESEEEPKL
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.2
0.12
1.4
53.5
45
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.6
0.31
1
56.6
42.4
Minor 5ss
26
-2.8
3
31.3
42.5
Minor BPS
58.1
0.25
1.4
63.93
36.1

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000023716
59619859 - 59726451
106593