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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59641247_59659300_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59641247 - 59659300
Intron Length:
18054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTAACTTTAAAA
Flanking Amino Acid:
QGNITQKFDVSPVKINQISL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.5
0.84
0.6
81.5
30.5
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
62.3
0.38
1.4
67.46
38.2

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000046230
59624004 - 59726451
102448
ENSAPLT00000030424
59619859 - 59726451
106593
ENSAPLT00000029096
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000044720
59619859 - 59726451
106593