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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59659376_59665011_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59659376 - 59665011
Intron Length:
5636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACTA
5'SS Class:
major
3'SS Sequence:
TTTTTCAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAAAT
Flanking Amino Acid:
HMGVCSEDGKVQVFGLYSAE
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72
0.5
1
73.1
36.3
Minor 5ss
33.8
-1.8
3.5
47.8
47.6
Minor BPS
66.1
0.58
1.6
85.04
35.1

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029096
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000044720
59619859 - 59726451
106593
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000030424
59619859 - 59726451
106593
ENSAPLT00000046230
59624004 - 59726451
102448