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Intron Name: Anas_platyrhynchos_platyrhynchos_2_59675793_59679035_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59675793 - 59679035

Intron Length:

3243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTAAACTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

TTGTATTTAAAC

Flanking Amino Acid:

GHLIAWANNMGVKILDMISK

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

81.6

0.78

0.8

24.9

Major PPT

79.1

0.65

0.9

74.8

39.7

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

63.5

0.4

1.6

72.54

38.3

Associated Gene:

Gene:

VPS41

Ensembl Gene ID:

ENSAPLG00000005152

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029096

59619859 - 59726451

106593

ENSAPLT00000045810

59619859 - 59726451

106593

ENSAPLT00000023716

59619859 - 59726451

106593

ENSAPLT00000044720

59619859 - 59726451

106593

ENSAPLT00000005433

59619859 - 59726726

106868

ENSAPLT00000041406

59623827 - 59726451

102625

ENSAPLT00000030424

59619859 - 59726451

106593

ENSAPLT00000046230

59624004 - 59726451

102448