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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59680433_59688488_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59680433 - 59688488
Intron Length:
8056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACAAT
U12 Branch Point Sequence:
GTTTGCCTAACA
Flanking Amino Acid:
RDLPNRYVEIVFQFDTEFYI
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37.1
Major BPS
57.4
0.18
1.3
65.4
38
Major PPT
78.9
0.65
0.9
75.9
38
Minor 5ss
47.6
-0.2
2.8
64.3
47.2
Minor BPS
60
0.31
2.1
77.12
39.5

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000030424
59619859 - 59726451
106593
ENSAPLT00000029096
59619859 - 59726451
106593
ENSAPLT00000046230
59624004 - 59726451
102448