About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_596847_600903_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
596847 - 600903
Intron Length:
4057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGCCTTCTAACT
Flanking Amino Acid:
KIEGDMDVADRLLTELESPS
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73
0.52
0.8
67.5
33.8
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
53
0.17
1.7
70.31
40.6

Associated Gene:

Gene:
SNAP47
Ensembl Gene ID:
ENSAPLG00000005035
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037658
589924 - 605080
15157
ENSAPLT00000034054
583315 - 605080
21766
ENSAPLT00000021667
583315 - 603941
20627
ENSAPLT00000048243
583833 - 605080
21248
ENSAPLT00000005194
583315 - 606413
23099
ENSAPLT00000042628
583833 - 605080
21248