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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59688587_59690952_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59688587 - 59690952
Intron Length:
2366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTGTT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
TTGTATAGGATG
Flanking Amino Acid:
SYVKEISEKTEVECCARPRL
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
78.4
35.8
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
80.9
0.69
0.9
73.5
41.9
Minor 5ss
39.2
-1.2
3.4
59.1
45.4
Minor BPS
41.6
-0.8
1.8
48.62
39.3

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029096
59619859 - 59726451
106593
ENSAPLT00000046230
59624004 - 59726451
102448
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000030424
59619859 - 59726451
106593