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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59691083_59692802_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59691083 - 59692802
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATGTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATAAAAT
Flanking Amino Acid:
QENECRDYHLEYSEGESLFY
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
80
0.75
1
78.6
31
Major PPT
80.5
0.69
0.9
74
40.3
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
45.5
-0.2
2.1
66.19
43.2

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029096
59619859 - 59726451
106593
ENSAPLT00000046230
59624004 - 59726451
102448
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000030424
59619859 - 59726451
106593