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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59692919_59694499_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59692919 - 59694499
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTGAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACTTTTTGAATA
Flanking Amino Acid:
DWLLEKKKYEEALMAAEISQ
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
83.5
28.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.4
0.57
0.9
70.7
39
Minor 5ss
47.9
-0.2
2.8
67.6
37.2
Minor BPS
59.7
0.3
1.3
65.59
35.3

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030424
59619859 - 59726451
106593
ENSAPLT00000046230
59624004 - 59726451
102448
ENSAPLT00000029096
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000044720
59619859 - 59726451
106593
ENSAPLT00000041406
59623827 - 59726451
102625