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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59698161_59709551_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59698161 - 59709551
Intron Length:
11391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTACTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CTTTCTTTACTT
Flanking Amino Acid:
YKFKEIGQLKKAVDMLLDNE
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
83
0.74
0.7
82.4
27.9
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
68.9
0.67
1.6
82.98
39.3

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030424
59619859 - 59726451
106593