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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59708301_59709551_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59708301 - 59709551
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
TTCTTTACTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CTTTCTTTACTT
Flanking Amino Acid:
IVLLMDFDSEKAVDMLLDNE
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
83
0.74
0.7
82.4
27.9
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
68.9
0.67
1.6
82.98
39.3

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000044720
59619859 - 59726451
106593
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000046230
59624004 - 59726451
102448